PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40098
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 58aa    MW: 6756.81 Da    PI: 11.4448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40098genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17149355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a   l+g
  PEQU_40098  1 YRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVYLLRG 49
                9*****99.**********9...336*********************998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-11147IPR001471AP2/ERF domain
SMARTSM003801.5E-29158IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21157IPR016177DNA-binding domain
CDDcd000181.02E-24158No hitNo description
PROSITE profilePS5103222.774157IPR001471AP2/ERF domain
PRINTSPR003671.2E-12112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-30158IPR001471AP2/ERF domain
PRINTSPR003671.2E-123958IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 58 aa     Download sequence    Send to blast
YRGVRMRKWG KWVAEIREPN KRSRIWLGSY SSPVAAARAY DTAVYLLRGR SALLNFPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-16157663ATERF1
3gcc_A1e-16157663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008776525.14e-32PREDICTED: ethylene-responsive transcription factor ERF011-like
RefseqXP_010270594.12e-32PREDICTED: ethylene-responsive transcription factor ERF010
SwissprotQ9SW635e-31RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLA0A103XWW14e-32A0A103XWW1_CYNCS; AP2/ERF domain-containing protein
STRINGVIT_18s0001g10150.t012e-31(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.13e-32related to AP2 10